diff --git a/app/Actions/Server/CleanupDocker.php b/app/Actions/Server/CleanupDocker.php
index 0d9ca0153..98cce088b 100644
--- a/app/Actions/Server/CleanupDocker.php
+++ b/app/Actions/Server/CleanupDocker.php
@@ -48,7 +48,7 @@ public function handle(Server $server, bool $deleteUnusedVolumes = false, bool $
         );
 
         $commands = [
-            'docker container prune -f --filter "label=coolify.managed=true" --filter "label!=coolify.proxy=true"',
+            'docker container prune -f --filter "label=coolify.managed=true" --filter "label!=coolify.proxy=true" --filter "label!=coolify.type=database" --filter "label!=coolify.type=application" --filter "label!=coolify.type=service"',
             $imagePruneCmd,
             'docker builder prune -af',
             "docker images --filter before=$helperImageWithVersion --filter reference=$helperImage | grep $helperImage | awk '{print $3}' | xargs -r docker rmi -f",
diff --git a/app/Http/Controllers/Api/DatabasesController.php b/app/Http/Controllers/Api/DatabasesController.php
index f3783696d..8241e5fba 100644
--- a/app/Http/Controllers/Api/DatabasesController.php
+++ b/app/Http/Controllers/Api/DatabasesController.php
@@ -747,7 +747,7 @@ public function create_backup(Request $request)
         }
 
         if ($request->filled('s3_storage_uuid')) {
-            $existsInTeam = S3Storage::ownedByCurrentTeam()->where('uuid', $request->s3_storage_uuid)->exists();
+            $existsInTeam = S3Storage::ownedByCurrentTeamAPI($teamId)->where('uuid', $request->s3_storage_uuid)->exists();
             if (! $existsInTeam) {
                 return response()->json([
                     'message' => 'Validation failed.',
@@ -774,7 +774,7 @@ public function create_backup(Request $request)
 
         // Convert s3_storage_uuid to s3_storage_id
         if (isset($backupData['s3_storage_uuid'])) {
-            $s3Storage = S3Storage::ownedByCurrentTeam()->where('uuid', $backupData['s3_storage_uuid'])->first();
+            $s3Storage = S3Storage::ownedByCurrentTeamAPI($teamId)->where('uuid', $backupData['s3_storage_uuid'])->first();
             if ($s3Storage) {
                 $backupData['s3_storage_id'] = $s3Storage->id;
             } elseif ($request->boolean('save_s3')) {
@@ -982,7 +982,7 @@ public function update_backup(Request $request)
             ], 422);
         }
         if ($request->filled('s3_storage_uuid')) {
-            $existsInTeam = S3Storage::ownedByCurrentTeam()->where('uuid', $request->s3_storage_uuid)->exists();
+            $existsInTeam = S3Storage::ownedByCurrentTeamAPI($teamId)->where('uuid', $request->s3_storage_uuid)->exists();
             if (! $existsInTeam) {
                 return response()->json([
                     'message' => 'Validation failed.',
@@ -1015,7 +1015,7 @@ public function update_backup(Request $request)
 
         // Convert s3_storage_uuid to s3_storage_id
         if (isset($backupData['s3_storage_uuid'])) {
-            $s3Storage = S3Storage::ownedByCurrentTeam()->where('uuid', $backupData['s3_storage_uuid'])->first();
+            $s3Storage = S3Storage::ownedByCurrentTeamAPI($teamId)->where('uuid', $backupData['s3_storage_uuid'])->first();
             if ($s3Storage) {
                 $backupData['s3_storage_id'] = $s3Storage->id;
             } elseif ($request->boolean('save_s3')) {
diff --git a/app/Models/S3Storage.php b/app/Models/S3Storage.php
index 2e99aa287..b28fcc744 100644
--- a/app/Models/S3Storage.php
+++ b/app/Models/S3Storage.php
@@ -66,6 +66,13 @@ public static function ownedByCurrentTeam(array $select = ['*'])
         return S3Storage::whereTeamId(currentTeam()->id)->select($selectArray->all())->orderBy('name');
     }
 
+    public static function ownedByCurrentTeamAPI(int $teamId, array $select = ['*'])
+    {
+        $selectArray = collect($select)->concat(['id']);
+
+        return S3Storage::whereTeamId($teamId)->select($selectArray->all())->orderBy('name');
+    }
+
     public function isUsable()
     {
         return $this->is_usable;
diff --git a/tests/Feature/Api/DatabaseBackupCreationApiTest.php b/tests/Feature/Api/DatabaseBackupCreationApiTest.php
index 70933ccf3..8882fec39 100644
--- a/tests/Feature/Api/DatabaseBackupCreationApiTest.php
+++ b/tests/Feature/Api/DatabaseBackupCreationApiTest.php
@@ -2,6 +2,8 @@
 
 use App\Models\InstanceSettings;
 use App\Models\Project;
+use App\Models\S3Storage;
+use App\Models\ScheduledDatabaseBackup;
 use App\Models\Server;
 use App\Models\StandaloneDocker;
 use App\Models\StandalonePostgresql;
@@ -53,6 +55,17 @@
         'destination_id' => $this->destination->id,
         'destination_type' => $this->destination->getMorphClass(),
     ]);
+
+    $this->s3Storage = S3Storage::create([
+        'name' => 'test-s3',
+        'region' => 'us-east-1',
+        'key' => 'test-key',
+        'secret' => 'test-secret',
+        'bucket' => 'test-bucket',
+        'endpoint' => 'https://s3.example.com',
+        'team_id' => $this->team->id,
+        'is_usable' => true,
+    ]);
 });
 
 function backupHeaders(): array
@@ -164,4 +177,101 @@ function backupHeaders(): array
         $response->assertStatus(404);
         $response->assertJson(['message' => 'Database not found.']);
     });
+
+    test('creates backup with s3 storage via API token', function () {
+        $response = $this->withHeaders(backupHeaders())
+            ->postJson("/api/v1/databases/{$this->database->uuid}/backups", [
+                'frequency' => '0 2 * * 0',
+                'save_s3' => true,
+                's3_storage_uuid' => $this->s3Storage->uuid,
+                'enabled' => true,
+            ]);
+
+        $response->assertStatus(201);
+        $response->assertJsonStructure(['uuid', 'message']);
+
+        $backup = ScheduledDatabaseBackup::where('uuid', $response->json('uuid'))->first();
+        expect($backup)->not->toBeNull();
+        expect($backup->s3_storage_id)->toBe($this->s3Storage->id);
+        expect($backup->save_s3)->toBeTrue();
+        expect($backup->team_id)->toBe($this->team->id);
+    });
+
+    test('rejects s3_storage_uuid from another team', function () {
+        $otherTeam = Team::factory()->create();
+        $otherS3 = S3Storage::create([
+            'name' => 'other-s3',
+            'region' => 'us-east-1',
+            'key' => 'other-key',
+            'secret' => 'other-secret',
+            'bucket' => 'other-bucket',
+            'endpoint' => 'https://s3.example.com',
+            'team_id' => $otherTeam->id,
+            'is_usable' => true,
+        ]);
+
+        $response = $this->withHeaders(backupHeaders())
+            ->postJson("/api/v1/databases/{$this->database->uuid}/backups", [
+                'frequency' => '0 2 * * 0',
+                'save_s3' => true,
+                's3_storage_uuid' => $otherS3->uuid,
+            ]);
+
+        $response->assertStatus(422);
+        $response->assertJsonValidationErrors(['s3_storage_uuid']);
+    });
+});
+
+describe('PATCH /api/v1/databases/{uuid}/backups/{scheduled_backup_uuid}', function () {
+    test('updates backup to use s3 storage via API token', function () {
+        $backup = ScheduledDatabaseBackup::create([
+            'frequency' => 'daily',
+            'enabled' => true,
+            'database_id' => $this->database->id,
+            'database_type' => $this->database->getMorphClass(),
+            'team_id' => $this->team->id,
+        ]);
+
+        $response = $this->withHeaders(backupHeaders())
+            ->patchJson("/api/v1/databases/{$this->database->uuid}/backups/{$backup->uuid}", [
+                'save_s3' => true,
+                's3_storage_uuid' => $this->s3Storage->uuid,
+            ]);
+
+        $response->assertStatus(200);
+        $backup->refresh();
+        expect($backup->s3_storage_id)->toBe($this->s3Storage->id);
+        expect($backup->save_s3)->toBeTrue();
+    });
+
+    test('rejects s3_storage_uuid from another team on update', function () {
+        $otherTeam = Team::factory()->create();
+        $otherS3 = S3Storage::create([
+            'name' => 'other-s3',
+            'region' => 'us-east-1',
+            'key' => 'other-key',
+            'secret' => 'other-secret',
+            'bucket' => 'other-bucket',
+            'endpoint' => 'https://s3.example.com',
+            'team_id' => $otherTeam->id,
+            'is_usable' => true,
+        ]);
+
+        $backup = ScheduledDatabaseBackup::create([
+            'frequency' => 'daily',
+            'enabled' => true,
+            'database_id' => $this->database->id,
+            'database_type' => $this->database->getMorphClass(),
+            'team_id' => $this->team->id,
+        ]);
+
+        $response = $this->withHeaders(backupHeaders())
+            ->patchJson("/api/v1/databases/{$this->database->uuid}/backups/{$backup->uuid}", [
+                'save_s3' => true,
+                's3_storage_uuid' => $otherS3->uuid,
+            ]);
+
+        $response->assertStatus(422);
+        $response->assertJsonValidationErrors(['s3_storage_uuid']);
+    });
 });
diff --git a/tests/Unit/Actions/Server/CleanupDockerTest.php b/tests/Unit/Actions/Server/CleanupDockerTest.php
index fc8b8ab9b..1a6a0d3d6 100644
--- a/tests/Unit/Actions/Server/CleanupDockerTest.php
+++ b/tests/Unit/Actions/Server/CleanupDockerTest.php
@@ -437,6 +437,16 @@
     expect($buildImagesToDelete->pluck('tag')->toArray())->toContain('commit1-build');
 });
 
+it('container prune excludes persistent resource types', function () {
+    $sourceFile = file_get_contents(__DIR__.'/../../../../app/Actions/Server/CleanupDocker.php');
+
+    expect($sourceFile)->toContain('label!=coolify.type=database');
+    expect($sourceFile)->toContain('label!=coolify.type=application');
+    expect($sourceFile)->toContain('label!=coolify.type=service');
+    expect($sourceFile)->toContain('label!=coolify.proxy=true');
+    expect($sourceFile)->toContain('label=coolify.managed=true');
+});
+
 it('preserves build image for currently running tag', function () {
     $images = collect([
         ['repository' => 'app-uuid', 'tag' => 'commit1', 'created_at' => '2024-01-01 10:00:00', 'image_ref' => 'app-uuid:commit1'],